BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB030C06LP1|AL429188
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig848 1117 0.0
3x_Contig200 389 e-108
>3x_Contig848
Length = 3091
Score = 1117 bits (555), Expect = 0.0
Identities = 596/619 (96%), Gaps = 1/619 (0%)
Strand = Plus / Plus
Query: 1 gatcaattttctgatagaaatagagagagtagagtgtgaaagagccatcaccagggagtg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 2474 gatcaattttctgatagaaatagagag-gtagagtgtgaaagagccatcaccaggcagtt 2532
Query: 61 ctctcacagaatggaacatcttttcaccgtaaacatgtggsacgatcacttgcatcatgt 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2533 ctctcacagaatggaacatcttttcaccgtaaacatgtggcacgatcacttgcatcatgt 2592
Query: 121 tctatacggattggggkttttcgcaactatattcacatactatttttcatggkacatcat 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2593 tctatacggattggggtttttcgcaactatattcacatactatttttcatggtacatcat 2652
Query: 181 gcctttccaactatttaccgccatttgcatgttcttcatcgtcaccgatgcaccattatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2653 gcctttccaactatttaccgccatttgcatgttcttcatcgtcaccgatgcaccattatt 2712
Query: 241 gccaaatcctaagtataagarattcttgcatcctgttatttgttcagtggctctattctg 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 gccaaatcctaagtataagaaattcttgcatcctgttatttgttcagtggctctattctg 2772
Query: 301 grtcgttgaattgatctcatcactcattaaacatcgccaaatcaaatatttcctctcggr 360
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 gatcgttgaattgatctcatcactcattaaacatcgccaaatcaaatatttcctctcgga 2832
Query: 361 tcttcgtgaatacaagggtgggacaacatacttaacattattcacaaatactagtgtatc 420
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 tcttcgtgaatacaaggttggtacaacatacttaacattattcacaaatactagtgtatc 2892
Query: 421 aggkccaaacaagaactggcctggcgccggkgatattttttcctcctgkatggrcgtctc 480
||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 2893 aggtccaaacaagaactggcctggcgccggtgatattttttcctcctgtatggacgtctc 2952
Query: 481 tattgtcgcattatcgatgcscatgtacacttacagaagcgatckaaagaracattttgt 540
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 2953 tattgtcgcattatcgatgcccatgtacacttacagaagcgatctaaagaaacattttgt 3012
Query: 541 cgtgcttgttatcccaaccatctctttatgtgctgcsactctaatgtkaaatccctttat 600
||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 3013 cgtgcttcttatcccaaccatctctttatgtgctgccactctaatgttaaatccctttat 3072
Query: 601 atgcgacaacatcggkatc 619
|||| |||||||||| |||
Sbjct: 3073 atgctacaacatcggtatc 3091
>3x_Contig200
Length = 1068
Score = 389 bits (193), Expect = e-108
Identities = 215/221 (97%), Gaps = 2/221 (0%)
Strand = Plus / Minus
Query: 773 acttcttcagagtacctcgcgatgatttcgtcaccagaggcctaactctaggctgtwact 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1068 acttcttcagagtacctcgcgatgatttcgtcaccagaggcctaactctaggctgtaac- 1010
Query: 833 gcggtgccatcgccaccagctacctcttaacagtagatagaagagctgctgctatcagct 892
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 gcg-tgccatcgccaccagctacctcttaacagtagatagaagagctgctgctatcagct 951
Query: 893 ccctttccttcgtcttatacggtgcaataatgggtatcctaagttcgatagggsccataa 952
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 950 ccctttccttcgtcttatacggtgcaataatggttatcctaagttcgatagggcccataa 891
Query: 953 aagacttcgtgcattagatcgtatcgctataaccaaatgat 993
|||||||||||||| ||||||||||||||||||||||||||
Sbjct: 890 aagacttcgtgcatcagatcgtatcgctataaccaaatgat 850
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.32
Gapped
Lambda K H
1.40 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4575
Number of Sequences: 1807
Number of extensions: 4575
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 2
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.6 bits)
S2: 50 (101.1 bits)